CDS

Accession Number TCMCG057C49398
gbkey CDS
Protein Id XP_018456792.1
Location complement(join(21039345..21039491,21039588..21039935,21040053..21040229,21040444..21040952,21041216..21041387,21041788..>21042024,<21043216..21043295,21043372..21043766,21043768..21043991,21044148..21044744,21044970..21045060,21045463..21045564,21045701..21045813,21045905..21045993,21046080..21046148,21046241..21046524))
Gene LOC108827801
GeneID 108827801
Organism Raphanus sativus

Protein

Length 1238aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018601290.1
Definition PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 16 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category K
Description mediator of RNA polymerase II transcription subunit
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE -
KEGG_ko -
EC -
KEGG_Pathway -
GOs GO:0002682        [VIEW IN EMBL-EBI]
GO:0002684        [VIEW IN EMBL-EBI]
GO:0002831        [VIEW IN EMBL-EBI]
GO:0002833        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0006109        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006970        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0007623        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009966        [VIEW IN EMBL-EBI]
GO:0010104        [VIEW IN EMBL-EBI]
GO:0010112        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010646        [VIEW IN EMBL-EBI]
GO:0010675        [VIEW IN EMBL-EBI]
GO:0010962        [VIEW IN EMBL-EBI]
GO:0010981        [VIEW IN EMBL-EBI]
GO:0016592        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0022622        [VIEW IN EMBL-EBI]
GO:0023051        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031347        [VIEW IN EMBL-EBI]
GO:0031349        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032101        [VIEW IN EMBL-EBI]
GO:0032103        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032881        [VIEW IN EMBL-EBI]
GO:0032885        [VIEW IN EMBL-EBI]
GO:0032922        [VIEW IN EMBL-EBI]
GO:0032950        [VIEW IN EMBL-EBI]
GO:0032951        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043255        [VIEW IN EMBL-EBI]
GO:0043900        [VIEW IN EMBL-EBI]
GO:0043902        [VIEW IN EMBL-EBI]
GO:0044087        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045088        [VIEW IN EMBL-EBI]
GO:0045089        [VIEW IN EMBL-EBI]
GO:0048364        [VIEW IN EMBL-EBI]
GO:0048511        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048580        [VIEW IN EMBL-EBI]
GO:0048583        [VIEW IN EMBL-EBI]
GO:0048584        [VIEW IN EMBL-EBI]
GO:0048586        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050776        [VIEW IN EMBL-EBI]
GO:0050778        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050793        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051128        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051239        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070297        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0080134        [VIEW IN EMBL-EBI]
GO:0099402        [VIEW IN EMBL-EBI]
GO:1901672        [VIEW IN EMBL-EBI]
GO:1902066        [VIEW IN EMBL-EBI]
GO:1902531        [VIEW IN EMBL-EBI]
GO:1903338        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:2000022        [VIEW IN EMBL-EBI]
GO:2000026        [VIEW IN EMBL-EBI]
GO:2000028        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000241        [VIEW IN EMBL-EBI]
GO:2001006        [VIEW IN EMBL-EBI]
GO:2001009        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGAATCAGCAAGTTTCTCTGGGTAACAGCATCGGAGACGCTCCTGCTACTGCTACGGAGGAAGAAGAAGAAGAAGAAGAAGAAGTGAATCAACAGCAGATAGAGGAGGAGGGGGCTGAATCTAGGGATCAAACCGTCGTCGAGGAGAAATCAGGAGAGAAAGTAGAGGATCAGATGGAGGTTGATCCCGTGAGCCCCGCCACAGTGTTCTGCGTTACGCTTAAACAGCCCAACTCCAATTTGATTCATAAGATGAGCGTCCCTGAACTCTGCCGTAACTTCAGTGCTGTCGCGTGGTGTGGCAAATTGAATGCTATAGCTTGTGCTTCCGAGACATGCGCCAGGATTCCAAGCTCCAAGGCAATTCCACCTTTTTGGATCCCAATACATATCTTAATACCTGAGCGACCTACTGAGTCTGCCGTTTTTAACGTTGTCGCAGACTCCCCGCGTGATTCTGTTCAATTTATTGAATGGTCTCCCACTTCTTCTCCTCGTGCGTTACTCATTGCTAACTTTCATGGACGCATCACTATCTGGACCCAGCCTTCTCAGGGTACGGCTAACGTAGTGCACGATGCTACCTCCTGGCACTGTGAGCATGAATGGCGTCAGGATATTGCTGTTGTTACGAAGTGGTTGACTGGGGCTTCTCCTTATAAGTGGTTGTCCTCCAAGCCAAGTTCTGGTACAAATGCAAAGTCAACTTTCGAGGAGAAATTTCTCTCACAGAGCTCCGAAAGCTCAGCTCGGTGGCCCAACTTCCTCTGTGTATGCTCTGTTTTATCATCCGGCTCTGTTCAACTTCATTGGTCCCAGGGGTCTTCTAACCAAGAAGGCACTGCACCAAAGTGGTTTAGTACAAAGAAAGGTCTTTTAGGTGCAGGACCTAGTGGGATTATGGCTGCTGATGCTATCATAACGGACAGTGGTGCCATGCATGTAGCAGGGGTTCCAATTGTAAACCCCTCAACAGTTGTAGTATGGGAGGTGACCCCTGGCCCTGGCAATGGACTCCAGGCGACTCCAAAAATCTCTACAGGCAGTCGTGTGCCACCTTCCCTTAGTTCTTCCGCTTGGACAGGCTTTGCTCCTTTAGCTGCATACTTGTTCAACTGGCAAGAATACTTGATATCCGAGATAAAGGAAGGGAAGAAGCTTACAGATCAAGAATCCAGCGATGCAATATCACTTAGCTGCTCGCCAGTTTCCAACTTTTCTGCTTATGTAAGTCCCGAAGCTGCAGCTCAGTCTGCGGCAACCACTACATGGGGATCTGGAGTTACTGCTGTTGCTTTTGATCCAACTCGTGGTGGTTCAGTAATCGCAGTTGTTATAGTTGAAGGACAGTACATGTCCCCATATGATCCAGATGAAGGTCCTTCAATCACAGGTTGGAAAGTACAGCGCTGGGAATCAAGTGTTCAACCTGTTGTACTGCATCAGATATTTGGAAACCCAACTTCGAATTTTGGTGGACAGGTCCCCACCCAAACTGTCTGGATATCGAGAGTGGATATGAGCATACCACCTACAAACGATTTCAAGAATCATCAAACAGCTGCTACTGGGCCTAGTGTGGATGCACAGAGGGAGCCTAATTCTGGTGGTGAGAAGGCTAACAAGGTTGTTTTTGACCCTTTTGATTTGCCAAGTGATATTCGTACACTTGCACGGATTGTCTATTCTGCTCATGGTGGTGAAATTGCGGTTGCTTTTCTTCGTGGTGGAGTTCATATCTTTTCGGGTCCAACTTTTTCACCCGTTGAAAACTATCAAGTAAATGTCGGTTCAGCAATTGCTGCACCCGCATTTTCTCCAACGAGCTGTTGCTCGGCTTCTGTATGTCATGATGCTGCCAAGGACTGTGCAATGTTGAAAATCATTCGTCTACTTCCGCCTGCCCTTCCACCTAACCAATCAAAGGTTGATCAATCATCGTGGGAGCGGGCAATTGCTGAGAGGTTCTGGTGGAGTCTTTTGGTCGGAGTTGACTGGTGGGATGCAGTTGGCTGTACACAGAGTGCTGCAGAGGATGGCATTGAATCTAGACAGGATCAAATGTCGGTTACTTGAAGGAACCAATGCTCAGGAAGTTCGTGCCATGGTTTTAGATATGCAAGCAAGATTGTTGTTGGACATGCTTGGAAAAGGAATTGAATCAGCTCTTGTGAACCCTTCAGCGTTGGTTATTGAGCCATGGCGAACAGATGGCGAGACAATATTAGGCACCGATCCTGAGGCAATGGCTGTCGATCCTACTCTTGTTTCCAGTATTCAGGCTTATGTGGATGCTGTTCTTGACCTGGCTTCTCATTTCATTACACGTTTGAGACGCTATGCGAGTTTTTGTCGGACACTTGCAAGCCATGCTGCTTCCACTGGAACTGGCAGTAATCGCAACATGGTTGCCAGTCCCACACAAAATGCATCTTCTCCTGCAACAACCCAGGCTGTTCCTGACAAGTCAGTGAATCATGCAGCCGGGCAACCTACTGCTACAACTAGTACTACAAACTCCAGCGGAAGCACACAAATGCAAGCTTGGATGCAAGGTGCCATAGCAAAATTTAGTAGCTCAAATGATGGAGTATCAAACTCTACTGCAAGCCCGATCAGTGGTTCGGCTACCTTCATGCCAATAAGCATCAATACAGGAACATTTCCTGGAACACCAGCTGTTCGGCTCATTGGGGACTGTCATTTCCTTCATCGGTTATGCCAGCTTCTGCTATTCTGTTACTTCCAGCGGTTACAGGCTTCGCGAAATCATCAGAAAAATGCTGATACCAGTTCACAAAAGCTTCAAACAGGGGCTACCAGCAAGTTGGAAGAGGTCAACTCTGCTAAACCAAACCCTGCCGGTCAAGGATATGGTGGAGTGAAAGGGATTGATGATAATTCTGCCCGTACAACAAAGATGGGTTCCGGGAATGCCGGTCAGGGATACACTTTTGAGGAGGTGAGAGTTCTTTTCCATATACTAATGGATCTCTGCAAGCGAACAGCGGCGCTTCCGCATCCATTACCTGGCTCTCAGGTAGGTAGTGGAAACATCCAAGTTCGACTGCACTATATTGATGGAAACTACACTGTGTTGCCTGAGGTGGTAGAAGCAGCTCTTGGACCACATATGCAGAACATGCCTCGTCCAAGAGGAGCCGATGCTGCCGGTCTTCTACTCCGGGAGTTGGAACTTCATCCGCCATCCGAAGAATGGCATAGAAGAAATTTATTCGGTGGTCCCGGGACAGAGCCTGAGGATGTGTTACCGTCAGATGATACTTTTTTCACGCAGGGTCATTCGGTAGATGTGTACGACCGAGTCCAAAGTCTCTGGCCAAGAAAACGCAGAATGTCTGAAAGAGATGCGGCTTTTGGTTTAAATACTTCTATGGGTTTGGGTGCATATCTTGGGATCATGGGCTCTCGTAGGGATGTTGTCACCGCGACGTGGAAAACTGGCCTTGAAGGAGTTTGGTACAAGTGCATAAGATGCCTAAGGCAGACATCTGCATTTGCTTCACCAGGTGCTTCTAAGCAGCCAAATCCGAATGAACGTGAGGCGTGGTGGACCAGCCGTTGGGTTTATTGCTGCCCCATGTGTGGTGGAACGTGGGTCCGTGTTGTATAG
Protein:  
MNQQVSLGNSIGDAPATATEEEEEEEEEVNQQQIEEEGAESRDQTVVEEKSGEKVEDQMEVDPVSPATVFCVTLKQPNSNLIHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKAIPPFWIPIHILIPERPTESAVFNVVADSPRDSVQFIEWSPTSSPRALLIANFHGRITIWTQPSQGTANVVHDATSWHCEHEWRQDIAVVTKWLTGASPYKWLSSKPSSGTNAKSTFEEKFLSQSSESSARWPNFLCVCSVLSSGSVQLHWSQGSSNQEGTAPKWFSTKKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSAWTGFAPLAAYLFNWQEYLISEIKEGKKLTDQESSDAISLSCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWKVQRWESSVQPVVLHQIFGNPTSNFGGQVPTQTVWISRVDMSIPPTNDFKNHQTAATGPSVDAQREPNSGGEKANKVVFDPFDLPSDIRTLARIVYSAHGGEIAVAFLRGGVHIFSGPTFSPVENYQVNVGSAIAAPAFSPTSCCSASVCHDAAKDCAMLKIIRLLPPALPPNQSKVDQSSWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLTSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVIEPWRTDGETILGTDPEAMAVDPTLVSSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAASTGTGSNRNMVASPTQNASSPATTQAVPDKSVNHAAGQPTATTSTTNSSGSTQMQAWMQGAIAKFSSSNDGVSNSTASPISGSATFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCYFQRLQASRNHQKNADTSSQKLQTGATSKLEEVNSAKPNPAGQGYGGVKGIDDNSARTTKMGSGNAGQGYTFEEVRVLFHILMDLCKRTAALPHPLPGSQVGSGNIQVRLHYIDGNYTVLPEVVEAALGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNLFGGPGTEPEDVLPSDDTFFTQGHSVDVYDRVQSLWPRKRRMSERDAAFGLNTSMGLGAYLGIMGSRRDVVTATWKTGLEGVWYKCIRCLRQTSAFASPGASKQPNPNEREAWWTSRWVYCCPMCGGTWVRVV